Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PAAD rs60482552 chr3:39056164 T/C 0.000149 178 15.27 16.37 7.47 KM Plot
PAAD rs60499434 chr11:125580714 A/G 0.000112 177 16.08 14.18 5.03 KM Plot
PAAD rs60616188 chr17:27413115 C/T 8.7E-6 176 14.37 18.85 5.03 KM Plot
PAAD rs60686777 chr1:16230062 G/A 1.68E-6 178 15.67 12.88 3.43 KM Plot
PAAD rs60773934 chr17:12904843 T/A 4.12E-6 176 16.03 15.47 7.77 KM Plot
PAAD rs60830492 chr2:217930232 A/G 3.08E-5 176 15.33 17.37 5.97 KM Plot
PAAD rs60844426 chr11:125580588 CT/C 0.000112 177 16.08 14.18 5.03 KM Plot
PAAD rs608941 chr6:44888740 C/T 0.000164 178 16.6 15.67 13.13 KM Plot
PAAD rs61030867 chr7:102720991 C/T 6.7E-8 178 16.17 12.2 3.43 KM Plot
PAAD rs61183047 chr15:78307400 G/A 0 177 15.43 17.4 1.03 KM Plot
PAAD rs61198758 chr17:40310910 C/T 8.84E-5 177 15.57 13.8 4 KM Plot
PAAD rs61209830 chr6:159767488 C/A 5.79E-8 178 15.43 21.15 3.17 KM Plot
PAAD rs61316234 chr17:40308103 C/T 8.84E-5 177 15.57 13.8 4 KM Plot
PAAD rs61442347 chr17:19989107 CG/C 5.01E-13 177 15.4 17.17 0.83 KM Plot
PAAD rs61484426 chr5:72636887 C/G 1.78E-9 175 15.62 14.23 2.2 KM Plot